PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT3G04740.1   RNA polymerase II transcription mediator

Lab Annot. RNA polymerase II transcription mediators
Mapman: 27.3 RNA.regulation of transcription
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os09g10960.1 7Oryza sativa0178454690 (0)_
Os08g24420.1 7Oryza sativa0119951640 (0)S
Os08g24400.1 7Oryza sativa042260790 (0)_
v1_GRMZM2G446872_P01 4a53Zea mays0175353693 (3)_
GRMZM2G446872_P01 3.21Zea mays0175353690 (0)_
Zm00001eb097360_P001 agpv5Zea mays0174452690 (0)_

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Med14(1)
TargetP: Cytoplasm (Class 2 C0.064; M0.078; S0.141; _0.829)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1703 aa (-cTP 1641)
Molecular Weight 185.51 kDA(-cTP )
PI 7.10(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

19114538(guard cells Arabidopsis leaf)
22060019(phosphoproteome - N-starved seedlings)
21533090(plasmodesmata-crude)
20733066(phosphoproteome-ABA-leaf)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help