PPDB

 The Plant Proteome Database

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AT3G04650.1   FAD/NAD(P)-binding oxidoreductase family protein
Lab Annot. oxidoreductase
Mapman: 35.2 not assigned.unknown
Curated Location plastid (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G56000.1 11Arabidopsis thaliana6E-3436928462 (1)C
AT1G55980.2 11Arabidopsis thaliana5E-2431828440 (0)C
AT1G56000.2 11Arabidopsis thaliana7E-2433326440 (0)_
Os12g40540.1 7Oryza sativa042565760 (0)C
Os12g40540.2 7Oryza sativa2E-17742560690 (0)C
Os03g57070.1 7Oryza sativa1E-3536130460 (0)S
Zm00001eb030960_P001 agpv5Zea mays043963770 (0)C
Zm00001eb030960_P002 agpv5Zea mays047159720 (0)C
GRMZM5G831313_P01 3.21Zea mays6E-137364576934 (34)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: AlaDh_PNT_C(1) Amino_oxidase(2) DAO(1) FAD_binding_2(1) FAD_binding_3(1) GIDA(1)
TargetP: Chloroplast (Class 2 C0.850; M0.072; S0.022; _0.015)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 486 aa (-cTP 402)
Molecular Weight 52.36 kDA(-cTP 42.93)
PI 8.74(-cTP 5.76)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
543Detail       leaf [A. thaliana] stroma (FPLC) >600 kDa (HMA) wild-type
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1454Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 2)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1639Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1640Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1984Detail       leaf [A. thaliana] plastid wild-type
2287Detail        [A. thaliana] Clp C1 WT
2300Detail        [A. thaliana] Clp C1 TRAP
2318Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
22060019(phosphoproteome - N-starved seedlings)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help