PPDB

PPDB	The Plant Proteome Database

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AT3G04600.1 Nucleotidylyl transferase superfamily protein

Lab Annot.

tRNA synthetase class I (W and Y) protein
Mapman: 29.1 protein.aa activation

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G04600.3 11 Arabidopsis thaliana 0 402 100 100 62 (20) _
AT3G04600.2 11 Arabidopsis thaliana 0 402 99 99 64 (22) _
Os12g35570.1 7 Oryza sativa 0 386 81 91 15 (15) _
Os12g35570.3 7 Oryza sativa 0 312 82 91 10 (10) _
Os12g35570.2 7 Oryza sativa 0 288 82 91 10 (10) _
Zm00001eb054210_P001 agpv5 Zea mays 0 393 80 90 0 (0) _
GRMZM2G002687_P01 3.21 Zea mays 0 393 80 90 41 (30) _
v1_GRMZM2G002603_P01 4a53 Zea mays 0 393 80 90 28 (27) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	tRNA-synt_1b(1)
TargetP:	Cytoplasm (Class 1 C0.139; M0.045; S0.124; _0.954)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	402 aa (-cTP 336)
Molecular Weight	45.75 kDA(-cTP )
PI	5.67(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
324	Detail								leaf [A. thaliana]	cell wall enriched	wild-type
371	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
451	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
528	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt2)
1207	Detail								leaf [A. thaliana]	total leaf tissue	clpp3 null
1405	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1408	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1412	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 1.2	clpr2-1
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1422	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
2182	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2183	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2184	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2185	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2249	Detail								seedlings [A. thaliana]	total tissue	gfs9
2287	Detail								[A. thaliana]		Clp C1 WT
2290	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2298	Detail								[A. thaliana]		Clp C1 WT
2301	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

15815986(Leaf)
19546170(mature pollen grains)
20118269(developing seeds)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data