PPDB

The Plant Proteome Database

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AT3G04510.1   LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640)

Lab Annot.
Mapman: 35.2 not assigned.unknown
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G28490.1 11Arabidopsis thaliana2E-8820078840 (0)C
AT1G07090.1 11Arabidopsis thaliana2E-7314270873 (0)_
AT5G58500.1 11Arabidopsis thaliana2E-6913271870 (0)C
Os01g61310.1 7Oryza sativa2E-6713177900 (0)C
Os05g28040.1 7Oryza sativa9E-6613178900 (0)_
Os05g39500.1 7Oryza sativa2E-6514470850 (0)_
GRMZM2G030116_P01 3.21Zea mays2E-7513176910 (0)_
Zm00001eb286430_P001 agpv5Zea mays2E-7513176910 (0)_
v1_GRMZM2G030116_P01 4a53Zea mays2E-7513176910 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF1179(2) DUF640(2)
TargetP: Chloroplast (Class 2 C0.945; M0.090; S0.008; _0.146)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 201 aa (-cTP 139)
Molecular Weight 22.77 kDA(-cTP 15.66)
PI 9.82(-cTP 9.81)

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help