PPDB

PPDB	The Plant Proteome Database

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AT3G04340.1 FtsH extracellular protease family

Lab Annot.

FTSHi5, inactive FTSH (likely envelope)
Mapman: 29.5.7.2.4* protein.degradation.metalloprotease.MA(M).M41

Curated Location

plastid (Pubmed: 23198870 12185496 18431481 ) (supported by in-house exprements)

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G50250.1 11 Arabidopsis thaliana 1E-42 524 27 45 549 (509) C
AT5G42270.1 11 Arabidopsis thaliana 2E-42 511 27 45 986 (900) C
AT3G47060.1 11 Arabidopsis thaliana 5E-39 221 39 57 0 (0) C
Os06g51029.1 7 Oryza sativa 7E-41 506 27 45 128 (128) C
Os06g51029.2 7 Oryza sativa 2E-38 423 28 46 63 (63) C
Os06g45820.1 7 Oryza sativa 2E-38 512 26 44 127 (127) C
GRMZM2G126361_P01 3.21 Zea mays 3E-41 504 27 45 413 (325) C
GRMZM2G126361_P02 3.21 Zea mays 3E-41 504 27 45 413 (325) C
v1_GRMZM2G126361_P01 4a53 Zea mays 3E-41 504 27 45 307 (307) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA(2) AAA_16(2) AAA_18(1) AAA_22(1) AAA_23(2) AAA_28(2) ABC_tran(2) DUF5101(1)
TargetP:	Chloroplast (Class 1 C0.951; M0.012; S0.026; _0.147)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1320 aa (-cTP 1277)
Molecular Weight	152.26 kDA(-cTP 147.51)
PI	8.80(-cTP 8.52)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
326	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
327	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
342	Detail								leaf [A. thaliana]	chloroplast low density membrane	wild-type
873	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
877	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type
1407	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	clpr2-1
1422	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 2)
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1454	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 2)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1531	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	wild-type (rep. 1)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1535	Detail								leaf [A. thaliana]		wild-type
1766	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1
1934	Detail								leaf [A. thaliana]	chloroplast	wild-type
1983	Detail								leaf [A. thaliana]	plastid	wild-type
1988	Detail								leaf [A. thaliana]	plastid	Prep1_Prep2
2320	Detail								[A. thaliana]	Thylakoids plastoglobule

* For details about the exprimental sources click here.

Published Proteomics Data

12938931(Total chloroplast envelope)
18431481(chloroplast)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
21533090(plasmodesmata-crude)

Comparative Proteomics Data