PPDB

The Plant Proteome Database

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AT3G03920.1   H/ACA ribonucleoprotein complex%2C subunit Gar1/Naf1 protein

Lab Annot. glycine-rich protein
Mapman: 27.4 RNA.RNA binding
Curated Location
TAIR curated location: thylakoid membrane (sensu Viridiplantae)15322131
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G18180.1 11Arabidopsis thaliana1E-6010688921 (1)M
Os11g37080.1 7Oryza sativa2E-58127819013 (13)M
Zm00001eb114360_P002 agpv5Zea mays1E-6110482930 (0)M
GRMZM6G847892_P02 3.21Zea mays1E-61104829310 (10)M
Zm00001eb200450_P001 agpv5Zea mays2E-6010480940 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Gar1(1)
TargetP: Mitochondria (Class 5 C0.033; M0.764; S0.018; _0.572)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 202 aa (-cTP 200)
Molecular Weight 20.98 kDA(-cTP )
PI 11.42(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
107Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
325Detail       BY2 cell suspension [Tobacco] cell wall enriched wild-type
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
2239Detail       seedlings [A. thaliana] total tissue gfs9
2241Detail       seedlings [A. thaliana] total tissue gfs9
2254Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

15322131(Thylakoid-stripped)
15496452(nucleolus)
19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data


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