PPDB

The Plant Proteome Database

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AT3G03590.1   SWIB/MDM2 domain superfamily protein

Lab Annot. SWIB complex BAF60b domain-containing protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G35605.1 11Arabidopsis thaliana8E-379663717 (4)M
AT2G14880.1 11Arabidopsis thaliana4E-3185587236 (26)C
AT1G31760.1 11Arabidopsis thaliana7E-308160720 (0)M
Os02g03730.1 7Oryza sativa3E-30141435911 (11)M
Os03g55310.1 7Oryza sativa2E-2880567618 (18)C
Os12g32280.1 7Oryza sativa3E-2590527031 (31)C
Zm00001eb214330_P001 agpv5Zea mays8E-288751720 (0)C
v1_GRMZM2G077088_P02 4a53Zea mays8E-2887517227 (27)C
GRMZM2G077088_P02 3.21Zea mays8E-2887517231 (31)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: SWIB(1)
TargetP: Chloroplast (Class 3 C0.790; M0.313; S0.008; _0.004)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 143 aa (-cTP 58)
Molecular Weight 15.31 kDA(-cTP 6.65)
PI 10.21(-cTP 6.63)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1392Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
2247Detail       seedlings [A. thaliana] total tissue atg5
2248Detail       seedlings [A. thaliana] total tissue wild-type
2253Detail       seedlings [A. thaliana] total tissue atg5

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
21841088(mitochondria (2DE native gel))

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help