PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT3G03060.1 P-loop containing nucleoside triphosphate hydrolases superfamily protein

Lab Annot.

ATPase
Mapman: 29.5.11 protein.degradation.ubiquitin

Curated Location

not plastid (supported by in-house exprements)

TAIR curated location: cell wall (sensu Magnoliophyta)16287169

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G16930.1 11 Arabidopsis thaliana 0 639 84 90 8 (8) S
AT2G18330.1 11 Arabidopsis thaliana 0 630 62 77 8 (6) C
AT4G36580.1 11 Arabidopsis thaliana 0 573 64 80 0 (0) C
Os02g46990.1 7 Oryza sativa 0 570 72 83 10 (10) S
Os02g47760.1 7 Oryza sativa 0 520 60 77 0 (0) _
Os06g50050.1 7 Oryza sativa 1E-15 221 29 47 21 (21) S
Zm00001eb187980_P001 agpv5 Zea mays 0 582 70 82 0 (0) S
v1_GRMZM2G066615_P01 4a53 Zea mays 0 582 70 82 12 (12) S
GRMZM2G066615_P01 3.21 Zea mays 0 582 70 82 6 (6) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA(1) AAA_11(1) AAA_14(2) AAA_16(2) AAA_17(1) AAA_18(1) AAA_22(2) AAA_28(1) AAA
TargetP:	Chloroplast (Class 4 C0.744; M0.011; S0.509; _0.007)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	628 aa (-cTP 575)
Molecular Weight	69.57 kDA(-cTP 64.40)
PI	9.13(-cTP 9.06)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
2272	Detail								seedlings [A. thaliana]	total tissue	wild-type
2273	Detail								seedlings [A. thaliana]	total tissue	wild-type
2274	Detail								seedlings [A. thaliana]	total tissue	wild-type
2275	Detail								seedlings [A. thaliana]	total tissue	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

16287169(Cell Wall proteome)
16618929(MITO/PLASTID-LOPIT-callus)
19525416(leaf (wt and clpr4-1 mutant))
20018591(Zn2+ binding (mitochondria - cell culture))
21311031(mitochondria)
21173025(root proteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data