PPDB

 The Plant Proteome Database

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AT3G02540.1   Rad23 UV excision repair protein family
Lab Annot. Rad23 UV excision repair protein
Mapman: 29.5.11.1 protein.degradation.ubiquitin.ubiquitin; 28.2 DNA.repair
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G02540.3 11Arabidopsis thaliana0419999921 (11)_
AT3G02540.2 11Arabidopsis thaliana0299999913 (5)_
AT5G38470.1 11Arabidopsis thaliana2E-171421637320 (12)_
Os06g15360.1 7Oryza sativa1E-150438597038 (38)_
Os06g15360.2 7Oryza sativa9E-150438597038 (38)_
Os09g24200.2 7Oryza sativa6E-14942557710 (0)_
GRMZM2G061620_P02 3.21Zea mays2E-14741857681 (1)_
Zm00001eb312260_P002 agpv5Zea mays2E-14741857680 (0)_
v1_GRMZM2G061620_P02 4a53Zea mays2E-14741857681 (1)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: CUE(3) DUF2407(1) Rad60-SLD(1) Rad60-SLD_2(1) SIP1(1) UBA(2) UBA_3(1) ubiquitin(
TargetP: Cytoplasm (Class 1 C0.032; M0.114; S0.025; _0.962)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 419 aa (-cTP 396)
Molecular Weight 44.25 kDA(-cTP )
PI 4.80(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1125Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1127Detail       leaf [A. thaliana] chloroplast plastoglobulek2k3
1351Detail       leaf [A. thaliana] total tissue t1-t2
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2249Detail       seedlings [A. thaliana] total tissue gfs9
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 
2318Detail       leaf [A. thaliana] PG plastoglobule 
2319Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

 18814325(cotyledons)
19429840(ubiquitinated or associated with ubiquitinated proteins (seedlings))
17216043(leaf)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help