PPDB

The Plant Proteome Database

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AT3G02060.1   DEAD/DEAH box helicase

Lab Annot. DEAD/DEAH box helicase
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase
Curated Location plastid (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G02060.3 11Arabidopsis thaliana08231001000 (0)C
AT3G02060.2 11Arabidopsis thaliana082210010018 (10)C
AT2G01440.1 11Arabidopsis thaliana5E-6041433540 (0)C
Os11g32880.1 7Oryza sativa077761790 (0)C
Os11g32880.2 7Oryza sativa077758770 (0)C
Os11g32880.3 7Oryza sativa059066840 (0)M
Zm00001eb113530_P001 agpv5Zea mays050566850 (0)_
GRMZM2G166718_P02 3.21Zea mays0775627915 (15)C
Zm00001eb113530_P003 agpv5Zea mays077562790 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: CarD_CdnL_TRCF(1) DEAD(2) Helicase_C(2) ResIII(2) TRCF(2)
TargetP: Chloroplast (Class 1 C0.925; M0.038; S0.008; _0.085)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 823 aa (-cTP 770)
Molecular Weight 93.93 kDA(-cTP 88.00)
PI 8.90(-cTP 8.36)

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


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