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AT3G01540.4 DEAD box RNA helicase 1

Lab Annot.

DEAD box RNA helicase (RH14) (AtDRH1)
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G01540.2 11 Arabidopsis thaliana 0 619 100 100 70 (28) _
AT3G01540.3 11 Arabidopsis thaliana 0 619 100 100 70 (28) _
AT3G01540.1 11 Arabidopsis thaliana 0 619 99 99 70 (28) _
Os01g07740.3 7 Oryza sativa 0 584 65 75 0 (0) _
Os01g07740.1 7 Oryza sativa 0 635 60 69 0 (0) _
Os01g07740.2 7 Oryza sativa 0 635 60 69 0 (0) _
Zm00001eb336740_P005 agpv5 Zea mays 0 586 67 78 0 (0) _
Zm00001eb336740_P003 agpv5 Zea mays 0 590 67 77 0 (0) _
Zm00001eb336740_P004 agpv5 Zea mays 0 590 67 78 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DEAD(2) ERCC3_RAD25_C(1) Helicase_C(2) IKI3(1) ResIII(2) WW(1)
TargetP:	Cytoplasm (Class 2 C0.093; M0.139; S0.073; _0.838)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	619 aa (-cTP 617)
Molecular Weight	67.73 kDA(-cTP )
PI	9.77(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1018	Detail								[aphid]
1421	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (rep. 1)
1440	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 2)
1441	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 3)
1442	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 1)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1545	Detail								leaf [A. thaliana]	TiO2 thylakoid membrane	wt
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2258	Detail								leaf [A. thaliana]	total seedlings	gfs9
2289	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2298	Detail								[A. thaliana]		Clp C1 WT
2302	Detail								[A. thaliana]		Clp C1 WT
2303	Detail								[A. thaliana]		Clp C1 WT
2304	Detail								[A. thaliana]		Clp C1 WT
2305	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19200160(flower-stage 12)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19376835(leaf phosphoproteins)
20706207(cell cycle interactome (cell culture))
21166475(cytosolic-fractions-crude)
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)
21515685(GreenCut2)

Comparative Proteomics Data