PPDB

PPDB	The Plant Proteome Database

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AT3G01180.1 starch synthase 2

Lab Annot.

starch synthase 2 (SS2)
Mapman: 2.1.2.2 major CHO metabolism.synthesis.starch.starch synthase

Curated Location

plastid stroma (Pubmed: 23198870 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT5G24300.1 11 Arabidopsis thaliana 2E-167 531 49 63 388 (220) C
AT5G24300.2 11 Arabidopsis thaliana 2E-167 531 49 63 336 (168) C
AT1G32900.1 11 Arabidopsis thaliana 3E-107 511 40 56 277 (172) C
Os02g51070.1 7 Oryza sativa 0 513 76 85 10 (10) C
Os10g30156.1 7 Oryza sativa 0 542 71 83 10 (10) C
Os06g12450.1 7 Oryza sativa 0 499 76 87 0 (0) C
Zm00001eb279740_P002 agpv5 Zea mays 0 639 64 75 0 (0) C
Zm00001eb279740_P001 agpv5 Zea mays 0 639 64 75 0 (0) C
Zm00001eb222830_P002 agpv5 Zea mays 0 495 75 87 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Glyco_trans_1_4(1) Glyco_trans_4_4(2) Glyco_transf_4(3) Glyco_transf_5(1) Glycos
TargetP:	Chloroplast (Class 2 C0.938; M0.162; S0.011; _0.032)
Predotar:
Subcel. Location:	Lumen
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	792 aa (-cTP 737) (-lTP 717)
Molecular Weight	87.59 kDA(-cTP 81.37)(-lTP 79.27)
PI	6.47(-cTP 5.91)(-lTP 6.321)

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
343	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
541	Detail								leaf [A. thaliana]	stroma (FPLC) >1 MDa stroma	wild-type
640	Detail								leaf [A. thaliana]	plastid nucleoid	wild-type
876	Detail								leaf [A. thaliana]	chloroplast thylakoid membrane	wild-type
1453	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1460	Detail								leaf [A. thaliana]	chloroplast stroma	clps (rep. 3)
1481	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type (rep. 1)
1484	Detail								leaf [A. thaliana]	chloroplast stroma	clpc1 x clps (rep. 2)
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1528	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1535	Detail								leaf [A. thaliana]		wild-type
1941	Detail								leaf [A. thaliana]	stroma WT stroma	wild-type
1947	Detail								leaf [A. thaliana]	stroma ClpS stroma	clpS
2112	Detail								leaf [A. thaliana]	Stroma stroma	wt
2114	Detail								leaf [A. thaliana]	Stroma stroma	wt
2116	Detail								leaf [A. thaliana]	Stroma stroma	cGep
2132	Detail								leaf [A. thaliana]	chloroplast fractionation	MSH1
2289	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2302	Detail								[A. thaliana]		Clp C1 WT
2303	Detail								[A. thaliana]		Clp C1 WT
2305	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
20733066(phosphoproteome-ABA-leaf)
21515685(GreenCut2)

Comparative Proteomics Data