PPDB

 The Plant Proteome Database

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AT3G01180.1   starch synthase 2
Lab Annot. starch synthase 2 (SS2)
Mapman: 2.1.2.2 major CHO metabolism.synthesis.starch.starch synthase
Curated Location plastid stroma (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G24300.1 11Arabidopsis thaliana2E-1675314963353 (248)C
AT5G24300.2 11Arabidopsis thaliana2E-1675314963301 (196)C
AT1G32900.1 11Arabidopsis thaliana3E-1075114056259 (212)C
Os02g51070.1 7Oryza sativa0513768510 (10)C
Os10g30156.1 7Oryza sativa0542718310 (10)C
Os06g12450.1 7Oryza sativa049976870 (0)C
Zm00001eb279740_P002 agpv5Zea mays063964750 (0)C
Zm00001eb279740_P001 agpv5Zea mays063964750 (0)C
Zm00001eb222830_P002 agpv5Zea mays049575870 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Glyco_trans_1_4(1) Glyco_trans_4_4(2) Glyco_transf_4(3) Glyco_transf_5(1) Glycos
TargetP: Chloroplast (Class 2 C0.938; M0.162; S0.011; _0.032)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 792 aa (-cTP 737) (-lTP 717)
Molecular Weight 87.59 kDA(-cTP 81.37)(-lTP 79.27)
PI 6.47(-cTP 5.91)(-lTP 6.321)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
541Detail       leaf [A. thaliana] stroma (FPLC) >1 MDa stromawild-type
640Detail       leaf [A. thaliana] plastid nucleoid wild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1460Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 3)
1481Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1535Detail       leaf [A. thaliana] wild-type
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
2112Detail       leaf [A. thaliana] Stroma stromawt
2114Detail       leaf [A. thaliana] Stroma stromawt
2116Detail       leaf [A. thaliana] Stroma stromacGep
2132Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2289Detail        [A. thaliana] Clp C1 TRAP
2290Detail        [A. thaliana] Clp C1 TRAP
2291Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2299Detail        [A. thaliana] Clp C1 TRAP
2300Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2302Detail        [A. thaliana] Clp C1 WT
2303Detail        [A. thaliana] Clp C1 WT
2305Detail        [A. thaliana] Clp C1 TRAP
2306Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP
2313Detail       leaf [A. thaliana] thylakoids thylakoid membrane 
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2321Detail       leaf [A. thaliana]  
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 18431481(chloroplast)
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
20733066(phosphoproteome-ABA-leaf)
21515685(GreenCut2)

Comparative Proteomics Data

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