PPDB

The Plant Proteome Database

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AT2G48120.1   pale cress protein (PAC)

Lab Annot. pale cress protein (PAC)
Mapman: 29.2.7* protein.synthesis.ribosome biogenesis
Curated Location plastid stroma (Pubmed: 23198870 10350211 28805278 )

TAIR curated location: amyloplast & etioplast & chloroplast & proplastid & chromoplast9648738,10350211
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G48120.2 11Arabidopsis thaliana031398988 (6)C
Os05g32680.1 7Oryza sativa2E-10228262793 (3)C
GRMZM2G091900_P01 3.21Zea mays2E-10731956725 (5)C
Zm00001eb287380_P001 agpv5Zea mays2E-10731956720 (0)C
v1_GRMZM2G091900_P01 4a53Zea mays2E-10731956723 (3)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF1722(1)
TargetP: Chloroplast (Class 2 C0.892; M0.095; S0.179; _0.025)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 313 aa (-cTP 291)
Molecular Weight 36.61 kDA(-cTP 34.38)
PI 4.91(-cTP 4.88)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1941Detail       leaf [A. thaliana] stroma WT stromawild-type

* For details about the exprimental sources click here.

Published Proteomics Data

19995723(chloroplast reference proteome)
22060019(phosphoproteome - N-starved seedlings)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help