PPDB

The Plant Proteome Database

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AT2G48070.1   resistance to phytophthora 1

Lab Annot. resistance to Phytophthora (RPH1)
Mapman: 20.1 stress.biotic
Curated Location plastid (Pubmed: 23198870 19170932 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G48070.2 11Arabidopsis thaliana1E-14319710010022 (22)C
AT2G48070.3 11Arabidopsis thaliana4E-141201989818 (18)C
Os05g33520.1 7Oryza sativa6E-8414283927 (7)C
Zm00001eb287740_P002 agpv5Zea mays4E-8415576850 (0)C
Zm00001eb287740_P001 agpv5Zea mays7E-419370800 (0)C

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM:
TargetP: Chloroplast (Class 4 C0.543; M0.236; S0.032; _0.032)
Predotar:
Subcel. Location: Transmembrane
TM-HMM prediction: 2 TMs
Aramemnon: 4 TMs
TAT position:
Length 197 aa (-cTP 145)
Molecular Weight 22.09 kDA(-cTP 16.34)
PI 9.45(-cTP 9.48)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
875Detail       leaf [A. thaliana] chloroplast stromawild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1399Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1402Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1442Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 1)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1446Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 2)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1448Detail       leaf [A. thaliana] total tissue (3 day HL) abck2xabck3 (rep. 1)
1450Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1533Detail       leaf [A. thaliana] total leaf tissue - 30 uM CAP clps (rep. 1)
1534Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP clps (rep. 1)
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2132Detail       leaf [A. thaliana] chloroplast fractionation MSH1
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

18431481(chloroplast)
19525416(leaf (wt and clpr4-1 mutant))
19995723(chloroplast reference proteome)
21515685(GreenCut2)

Comparative Proteomics Data


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