PPDB

The Plant Proteome Database

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AT2G47970.1   Nuclear pore localization protein NPL4

Lab Annot. NPL4 protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G63000.1 11Arabidopsis thaliana041283920 (0)_
AT2G47970.2 11Arabidopsis thaliana034397979 (3)M
Os01g27990.1 7Oryza sativa7E-16541860724 (4)_
Os01g27990.2 7Oryza sativa4E-12033658701 (1)_
Os08g10620.1 7Oryza sativa1E-149444610 (0)_
GRMZM2G047214_P01 3.21Zea mays6E-163418587262 (14)_
Zm00001eb366640_P001 agpv5Zea mays6E-16341858720 (0)_
v1_GRMZM2G047214_P01 4a53Zea mays6E-163418587211 (11)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DWNN(2) NPL4(2) UN_NPL4(2)
TargetP: Mitochondria (Class 5 C0.031; M0.553; S0.013; _0.535)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 413 aa (-cTP 361)
Molecular Weight 46.17 kDA(-cTP )
PI 5.00(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
621Detail       leaf [A. thaliana] total leaf tissue clpr4-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19525416(leaf (wt and clpr4-1 mutant))
19376835(leaf phosphoproteins)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))
21515685(GreenCut2)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help