PPDB

PPDB	The Plant Proteome Database

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AT2G47680.1 zinc finger (CCCH type) helicase family protein

Lab Annot.

zinc finger (CCCH type) helicase protein
Mapman: 28.1 DNA.synthesis/chromatin structure

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G01130.2 11 Arabidopsis thaliana 4E-53 557 29 48 0 (0) _
AT2G01130.1 11 Arabidopsis thaliana 4E-53 557 29 48 0 (0) M
AT2G35920.3 11 Arabidopsis thaliana 7E-53 519 29 48 0 (0) C
Os01g15300.1 7 Oryza sativa 0 1008 50 68 0 (0) _
Os01g15300.2 7 Oryza sativa 0 1008 50 67 0 (0) _
Os10g33275.2 7 Oryza sativa 3E-52 506 29 47 2 (2) _
Zm00001eb333510_P004 agpv5 Zea mays 0 965 49 67 0 (0) M
GRMZM2G146047_P03 3.21 Zea mays 0 759 53 71 0 (0) _
v1_GRMZM2G146047_P03 4a53 Zea mays 0 759 53 71 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA(1) AAA_16(1) AAA_22(1) ATPase(1) DEAD(2) Helicase_C(1) TniB(1) Torus(2) zf-C
TargetP:	Chloroplast (Class 2 C0.759; M0.046; S0.088; _0.148)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1015 aa (-cTP 986)
Molecular Weight	115.08 kDA(-cTP 112.20)
PI	6.19(-cTP 6.25)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

15028209(Total chloroplast)
19334764(plasma membrane (cell culture))
19995723(chloroplast reference proteome)
21166475(cytosolic-fractions-crude)

Comparative Proteomics Data