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AT2G47580.1 spliceosomal protein U1A

Lab Annot.

U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding
Mapman: 27.1.1 RNA.processing.splicing

Curated Location

TAIR curated location: nucleolus & nucleus15610358

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G30260.1 11 Arabidopsis thaliana 2E-85 242 54 73 22 (14) _
AT1G06960.1 11 Arabidopsis thaliana 1E-78 249 51 69 3 (3) _
AT1G06960.3 11 Arabidopsis thaliana 2E-63 217 50 66 2 (2) M
Os05g06280.1 7 Oryza sativa 4E-114 253 69 82 25 (25) M
Os03g18720.1 7 Oryza sativa 1E-73 239 53 68 11 (11) _
Os03g18720.2 7 Oryza sativa 5E-72 239 52 66 11 (11) _
GRMZM2G018020_P01 3.21 Zea mays 2E-121 254 68 81 6 (6) _
Zm00001eb282780_P002 agpv5 Zea mays 2E-121 254 68 81 0 (0) _
v1_GRMZM2G018020_P01 4a53 Zea mays 2E-121 254 68 81 18 (18) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Calcipressin(1) DUF4523(1) Limkain-b1(2) RRM_1(2) RRM_5(2) RRM_occluded(2)
TargetP:	Cytoplasm (Class 2 C0.113; M0.110; S0.075; _0.908)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	250 aa (-cTP 159)
Molecular Weight	28.07 kDA(-cTP )
PI	9.17(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
2236	Detail								seedlings [A. thaliana]	total tissue	gfs9
2238	Detail								seedlings [A. thaliana]	total tissue	gfs9
2239	Detail								seedlings [A. thaliana]	total tissue	gfs9
2241	Detail								seedlings [A. thaliana]	total tissue	gfs9
2254	Detail								leaf [A. thaliana]	total seedlings	gfs9
2255	Detail								leaf [A. thaliana]	total seedlings	gfs9
2256	Detail								leaf [A. thaliana]	total seedlings	gfs9
2257	Detail								leaf [A. thaliana]	total seedlings	gfs9
2258	Detail								leaf [A. thaliana]	total seedlings	gfs9
2259	Detail								leaf [A. thaliana]	total seedlings	gfs9
2325	Detail								leaf [A. thaliana]	thylakoids thylakoid membrane	abc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data