PPDB

 The Plant Proteome Database

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AT2G47580.1   spliceosomal protein U1A
Lab Annot. U1A (SPLICEOSOMAL PROTEIN U1A); RNA binding
Mapman: 27.1.1 RNA.processing.splicing
Curated Location
TAIR curated location: nucleolus & nucleus15610358
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G30260.1 11Arabidopsis thaliana2E-85242547323 (12)_
AT1G06960.1 11Arabidopsis thaliana1E-7824951693 (3)_
AT1G06960.3 11Arabidopsis thaliana2E-6321750662 (2)M
Os05g06280.1 7Oryza sativa4E-114253698225 (25)M
Os03g18720.1 7Oryza sativa1E-73239536811 (11)_
Os03g18720.2 7Oryza sativa5E-72239526611 (11)_
GRMZM2G018020_P01 3.21Zea mays2E-12125468818 (6)_
Zm00001eb282780_P002 agpv5Zea mays2E-12125468810 (0)_
v1_GRMZM2G018020_P01 4a53Zea mays2E-121254688118 (18)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Calcipressin(1) DUF4523(1) Limkain-b1(2) RRM_1(2) RRM_5(2) RRM_occluded(2)
TargetP: Cytoplasm (Class 2 C0.113; M0.110; S0.075; _0.908)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 250 aa (-cTP 159)
Molecular Weight 28.07 kDA(-cTP )
PI 9.17(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
2236Detail       seedlings [A. thaliana] total tissue gfs9
2238Detail       seedlings [A. thaliana] total tissue gfs9
2239Detail       seedlings [A. thaliana] total tissue gfs9
2241Detail       seedlings [A. thaliana] total tissue gfs9
2254Detail       leaf [A. thaliana] total seedlings gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)

Comparative Proteomics Data

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