PPDB

PPDB	The Plant Proteome Database

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AT2G47560.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G62690.1 11 Arabidopsis thaliana 2E-81 266 57 66 0 (0) _
AT3G16720.1 11 Arabidopsis thaliana 3E-32 148 45 60 0 (0) _
AT2G42360.1 11 Arabidopsis thaliana 2E-24 136 38 56 0 (0) _
Os05g07140.1 7 Oryza sativa 2E-22 156 33 48 0 (0) S
Os02g50930.1 7 Oryza sativa 2E-21 85 50 63 0 (0) M
Os08g34550.1 7 Oryza sativa 2E-21 109 42 58 0 (0) _
GRMZM2G416750_P01 3.21 Zea mays 8E-22 133 40 57 0 (0) _
v1_GRMZM2G416750_P01 4a53 Zea mays 8E-22 133 40 57 0 (0) _
v1_GRMZM2G044773_P01 4a53 Zea mays 8E-22 225 28 42 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF4381(1) FANCL_C(1) PHD(1) Prok-RING_1(2) Prok-RING_4(1) RINGv(1) SARAF(1) Tmp
TargetP:	Cytoplasm (Class 4 C0.519; M0.089; S0.006; _0.799)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	227 aa (-cTP 154)
Molecular Weight	25.47 kDA(-cTP )
PI	7.00(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data