PPDB

PPDB	The Plant Proteome Database

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AT2G47250.1 RNA helicase family protein

Lab Annot.

RNA helicase, putative
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G62310.1 11 Arabidopsis thaliana 0 730 92 96 68 (11) _
AT3G62310.3 11 Arabidopsis thaliana 0 527 91 96 0 (0) _
AT3G62310.2 11 Arabidopsis thaliana 0 533 90 95 0 (0) _
Os03g19960.1 7 Oryza sativa 0 727 86 92 23 (23) _
Os03g19960.2 7 Oryza sativa 0 526 85 91 23 (23) _
Os08g24760.1 7 Oryza sativa 0 657 52 73 1 (1) _
v1_GRMZM2G385931_P02 4a53 Zea mays 0 722 86 93 60 (60) _
GRMZM2G385931_P02 3.21 Zea mays 0 722 86 93 87 (43) _
Zm00001eb015060_P001 agpv5 Zea mays 0 722 86 93 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA_19(1) AAA_22(1) AAA_29(1) AAA_30(1) AAA_7(1) ABC_tran(2) DEAD(1) DUF2075(1)
TargetP:	Cytoplasm (Class 2 C0.085; M0.146; S0.081; _0.758)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	729 aa (-cTP 696)
Molecular Weight	82.65 kDA(-cTP )
PI	6.94(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1345	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 1)
1347	Detail								leaf [A. thaliana]	total tissue (5 day HL)	wild-type (rep. 3)
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1424	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 1)
1426	Detail								leaf [A. thaliana]	total leaf tissue	prep1xprep2xt1xt2 (rep. 3)
1440	Detail								leaf [A. thaliana]	total tissue (0 day HL)	wild-type (rep. 2)
1442	Detail								leaf [A. thaliana]	total tissue (0 day HL)	abck2xabck3 (rep. 1)
1531	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	wild-type (rep. 1)
1612	Detail								Natural Senescence leaf [A. thaliana]	chloroplast fractionation thylakoid membrane
1757	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag
1758	Detail								leaf [A. thaliana]	total leaf tissue	DXS_Flag+fosmidomycin
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2183	Detail								Rosettes [A. thaliana]	total soluble	tic40 and wt
2290	Detail								[A. thaliana]		Clp C1 TRAP
2320	Detail								[A. thaliana]	Thylakoids plastoglobule

* For details about the exprimental sources click here.

Published Proteomics Data

12938931(Total chloroplast envelope)
18538804(total leaf)
17432890(leaf total membranes)
19525416(leaf (wt and clpr4-1 mutant))
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data