PPDB

PPDB	The Plant Proteome Database

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AT2G47240.1 AMP-dependent synthetase and ligase family protein

Lab Annot.

long-chain acyl-CoA synthetase 1 (LACS1)
Mapman: 11.1.9 lipid metabolism.FA synthesis and FA elongation.long chain fatty acid CoA ligase

Curated Location

ER (Pubmed: 21143684 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G47240.3 11 Arabidopsis thaliana 0 660 100 100 0 (0) _
AT2G47240.2 11 Arabidopsis thaliana 0 660 100 100 26 (15) _
AT2G47240.4 11 Arabidopsis thaliana 0 601 100 100 0 (0) _
Os05g04170.3 7 Oryza sativa 0 659 61 79 14 (14) _
Os05g04170.2 7 Oryza sativa 0 659 61 79 14 (14) _
Os05g04170.1 7 Oryza sativa 0 645 62 79 14 (14) _
GRMZM2G101875_P02 3.21 Zea mays 0 657 62 80 39 (39) _
GRMZM2G101875_P01 3.21 Zea mays 0 657 62 80 39 (39) _
v1_GRMZM2G101875_P01 4a53 Zea mays 0 657 62 80 31 (31) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AMP-binding(1) AMP-binding_C(1)
TargetP:	Cytoplasm (Class 2 C0.116; M0.154; S0.187; _0.840)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	660 aa (-cTP 653)
Molecular Weight	74.60 kDA(-cTP )
PI	5.97(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1405	Detail								leaf [A. thaliana]	total leaf tissue 1.07 rep 2.	wild-type
1417	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 2)
1534	Detail								leaf [A. thaliana]	total leaf tissue - 40 uM CAP	clps (rep. 1)
1766	Detail								leaf [A. thaliana]	Thylakoids thylakoid membrane	Met1-1
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2011	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2015	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2017	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2019	Detail								leaf [A. thaliana]	total leaf tissue	opda1-2
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2320	Detail								[A. thaliana]	Thylakoids plastoglobule

* For details about the exprimental sources click here.

Published Proteomics Data

18463617(suspension cells-phosphorylated proteins)
19200160(flower-stage 12)
19525416(leaf (wt and clpr4-1 mutant))
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)

Comparative Proteomics Data