PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G46650.1   cytochrome B5 isoform C
Lab Annot. B5 #1 (cytochrome b5 protein #1); heme binding / transition metal ion binding
Mapman: 21.3 redox.ascorbate and glutathione
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G48810.1 11Arabidopsis thaliana4E-441304669176 (157)_
AT5G53560.1 11Arabidopsis thaliana1E-421294970209 (183)_
AT2G32720.1 11Arabidopsis thaliana3E-39129447216 (8)_
Os10g37420.2 7Oryza sativa6E-45127507425 (25)_
Os05g01820.1 7Oryza sativa5E-41124497138 (38)_
Os02g43360.1 7Oryza sativa3E-4012250680 (0)_
v1_GRMZM2G074169_P04 4a53Zea mays1E-43127507039 (38)_
v1_GRMZM2G074169_P01 4a53Zea mays1E-43127507039 (38)_
GRMZM2G074169_P02 3.21Zea mays1E-43127507039 (38)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Cyt-b5(1)
TargetP: Cytoplasm (Class 3 C0.055; M0.102; S0.254; _0.840)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 132 aa (-cTP 101)
Molecular Weight 14.87 kDA(-cTP )
PI 5.68(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1418Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 3)
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1569Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3
1574Detail       leaf [A. thaliana] TiO2 thylakoid membranek2k3
1575Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1579Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1580Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1581Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1582Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1583Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1613Detail       Natural Senescence leaf [A. thaliana]  
1614Detail       Natural Senescence leaf [A. thaliana]  
1618Detail        [A. thaliana] m48
1620Detail        [A. thaliana] m48
1622Detail        [A. thaliana] m48
1745Detail        [A. thaliana] Col-0
1765Detail       leaf [A. thaliana] Thylakoids thylakoid membraneCol-0
1829Detail       leaf [A. thaliana] Thylakoids thylakoid membraneMet1-1 Fluctuating light
2005Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2030Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48

* For details about the exprimental sources click here.

Published Proteomics Data

 21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help