PPDB

PPDB	The Plant Proteome Database

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AT2G45810.1 DEA(D/H)-box RNA helicase family protein

Lab Annot.

DEAD box RNA helicase (RH06)
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G61240.1 11 Arabidopsis thaliana 0 525 82 86 63 (11) M
AT3G61240.2 11 Arabidopsis thaliana 0 525 82 86 63 (11) M
AT4G00660.2 11 Arabidopsis thaliana 0 526 78 85 37 (8) M
Os02g42860.1 7 Oryza sativa 0 526 73 82 6 (6) _
Os04g45040.1 7 Oryza sativa 0 439 82 91 8 (8) _
Os04g45040.3 7 Oryza sativa 0 439 82 91 8 (8) _
Zm00001eb220770_P002 agpv5 Zea mays 0 437 81 89 0 (0) _
v1_GRMZM2G086116_P01 4a53 Zea mays 0 437 81 89 6 (6) _
GRMZM2G086116_P01 3.21 Zea mays 0 437 81 89 69 (10) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	CMS1(1) DEAD(1) DivIC(2) Helicase_C(2) TFIIA(1) TMEM51(1)
TargetP:	Cytoplasm (Class 3 C0.242; M0.190; S0.029; _0.718)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	528 aa (-cTP 512)
Molecular Weight	60.42 kDA(-cTP )
PI	7.51(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
1418	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	clpr4-1 (rep. 3)
1428	Detail								[A. thaliana]	total leaf tissue 1.11	Prep1_Prep2_t1_t2
1431	Detail								leaf [A. thaliana]	total tissue (2% sucrose)	wild-type (rep. 2)
2009	Detail								leaf [A. thaliana]	total leaf tissue	wild-type
2286	Detail								[A. thaliana]		Clp C1 WT
2287	Detail								[A. thaliana]		Clp C1 WT
2288	Detail								[A. thaliana]		Clp C1 WT
2289	Detail								[A. thaliana]		Clp C1 TRAP
2290	Detail								[A. thaliana]		Clp C1 TRAP
2291	Detail								[A. thaliana]		Clp C1 TRAP
2296	Detail								[A. thaliana]		Clp C1 WT
2297	Detail								[A. thaliana]		Clp C1 WT
2298	Detail								[A. thaliana]		Clp C1 WT
2299	Detail								[A. thaliana]		Clp C1 TRAP
2300	Detail								[A. thaliana]		Clp C1 TRAP
2301	Detail								[A. thaliana]		Clp C1 TRAP
2302	Detail								[A. thaliana]		Clp C1 WT
2303	Detail								[A. thaliana]		Clp C1 WT
2304	Detail								[A. thaliana]		Clp C1 WT
2305	Detail								[A. thaliana]		Clp C1 TRAP
2306	Detail								[A. thaliana]		Clp C1 TRAP
2307	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)

Comparative Proteomics Data