PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G45530.1   RING/U-box superfamily protein

Lab Annot. RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT5G60580.2 11Arabidopsis thaliana2E-1117632500 (0)_
AT5G60580.4 11Arabidopsis thaliana2E-1117632500 (0)_
AT2G37950.1 11Arabidopsis thaliana9E-117343530 (0)_
Os05g11720.1 7Oryza sativa9E-094355690 (0)_
Os01g66970.3 7Oryza sativa9E-099035500 (0)_
Os01g66970.2 7Oryza sativa1E-089035500 (0)_
Zm00001eb221560_P004 agpv5Zea mays2E-7518762750 (0)_
Zm00001eb045560_P002 agpv5Zea mays4E-7518563750 (0)_
GRMZM2G131723_P02 3.21Zea mays2E-7318563750 (0)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: RINGv(1) zf-RING-like(1) zf-RING_2(1)
TargetP: Cytoplasm (Class 5 C0.513; M0.066; S0.037; _0.670)
Predotar:
Subcel. Location:
TM-HMM prediction: 2 TMs
Aramemnon: 2 TMs
TAT position:
Length 240 aa (-cTP 198)
Molecular Weight 26.63 kDA(-cTP )
PI 5.65(-cTP )

Experimental Evidence

 

View GeneModel  

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help