PPDB

 The Plant Proteome Database

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AT2G45290.1   Transketolase
Lab Annot. transketolase-2 (TKL-2)
Mapman: 1.3.8 PS.calvin cycle.transketolase
Curated Location plastid stroma (Pubmed: 23198870 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G45290.2 11Arabidopsis thaliana07411001000 (0)C
AT3G60750.1 11Arabidopsis thaliana074188932840 (1751)C
AT3G60750.2 11Arabidopsis thaliana074188932311 (1245)C
Os06g04270.1 7Oryza sativa07188288140 (140)C
Os04g19740.1 7Oryza sativa066378892 (2)C
Os07g09190.1 7Oryza sativa5E-0724726390 (0)C
Zm00001eb378030_P002 agpv5Zea mays0679849214 (14)C
Zm00001eb378030_P004 agpv5Zea mays0679839014 (14)C
GRMZM2G033208_P03 3.21Zea mays06338592340 (271)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DUF498(1) Transket_pyr(1) Transketolase_C(1) Transketolase_N(1) XFP_C(1)
TargetP: Chloroplast (Class 1 C0.970; M0.013; S0.014; _0.015)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 741 aa (-cTP 676)
Molecular Weight 79.92 kDA(-cTP 73.10)
PI 6.12(-cTP 5.63)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
99Detail       petal [B. oleracea] plastid stroma 
102Detail       petal [B. oleracea] plastid stromaAlboglabra
135Detail       leaf [A. thaliana] plastid thylakoid membranewild-type
249_250Detail       leaf [A. thaliana] chloroplast stromaffc1-2
259Detail       leaf [A. thaliana] chloroplast stromawild-type
303Detail       leaf [A. thaliana] chloroplast stromawild-type
310Detail       leaf [A. thaliana] total leaf tissue clpr2-1:R2-TAPlong
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
869Detail       leaf [A. thaliana] chloroplast stromawild-type
870Detail       leaf [A. thaliana] chloroplast stromawild-type
871Detail       leaf [A. thaliana] chloroplast stromawild-type
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1350Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 3)
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1440Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 2)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1485Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1517Detail       leaf [A. thaliana] wild-type
1518Detail       leaf [A. thaliana] wild-type
1542Detail       leaf [A. thaliana] wild-type
1826Detail       leaf tip mesophyll [Zea Mays] chloroplast stromaW22 (repl. 3)
1934Detail       leaf [A. thaliana] chloroplast wild-type
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1944Detail       leaf [A. thaliana] stroma UVR stromaUVR
1945Detail       leaf [A. thaliana] stroma UVR stromaUVR
1946Detail       leaf [A. thaliana] stroma UVR stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1983Detail       leaf [A. thaliana] plastid wild-type
1988Detail       leaf [A. thaliana] plastid Prep1_Prep2
1999Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2000Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2001Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2007Detail       leaf [A. thaliana] WT PG plastoglobuleWT
2055Detail       Total leaf [A. thaliana] chloroplast stromawt and cgep
2061Detail       Total leaf [A. thaliana] chloroplast stromawt and cgep
2063Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2067Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2071Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2112Detail       leaf [A. thaliana] Stroma stromawt
2113Detail       leaf [A. thaliana] Stroma stromawt
2115Detail       leaf [A. thaliana] Stroma stromacGep
2146Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2150Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2182Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2247Detail       seedlings [A. thaliana] total tissue atg5
2249Detail       seedlings [A. thaliana] total tissue gfs9
2253Detail       seedlings [A. thaliana] total tissue atg5
2264Detail       leaf [A. thaliana] stroma Clp stromawild-type

* For details about the exprimental sources click here.

Published Proteomics Data

 15028209(Total chloroplast)
16242667(mature Pollen)
16358359(cell suspension (M&Skoog))
16502469(cell suspension-Cd-up)
15052571(soluble leaf)
18633119(stroma)
18463617(suspension cells-phosphorylated proteins)
18431481(chloroplast)
18814325(cotyledons)
19546170(mature pollen grains)
20118269(developing seeds)
19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))
19114538(guard cells Arabidopsis leaf)
19508356(mature pollen grains and pollen tubes)
20061580(chloroplast envelope (inner+outer))
19995723(chloroplast reference proteome)
22060019(phosphoproteome - N-starved seedlings)
21533090(plasmodesmata-crude)
21311031(mitochondria)
21166475(cytosolic-fractions-crude)
21173025(root proteome)
21433285(Crude microsomes cell_cultures)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data
Expr*SourceTech.SpotPepSeqChargeState(z)AreaRatioAmbiguityTissueSample from
249_250ffc1-2 cICAT- exp2 / wt cICAT- exp2cICAT1R.NLSQQCLNALAK.A + ICAT_l / R.NLSQQCLNALAK.A + ICAT_h20.96AT3G60750.1leaf [A. thaliana] chloroplast stroma
249_250ffc1-2 cICAT- exp2 / wt cICAT- exp2cICAT3R.NLSQQCLNALAK.A + ICAT_h / R.NLSQQCLNALAK.A + ICAT_l20.79AT3G60750.1leaf [A. thaliana] chloroplast stroma

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