PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G45140.1   plant VAP homolog 12
Lab Annot. vesicle-associated membrane protein, putative / VAMP, putative
Mapman: 35.1 not assigned.no ontology
Curated Location plasma membrane
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G45140.2 11Arabidopsis thaliana9E-16223992920 (0)_
AT3G60600.1 11Arabidopsis thaliana2E-132241829025 (22)_
AT3G60600.2 11Arabidopsis thaliana5E-97179798721 (18)_
Os04g45190.1 6Oryza sativa4E-10124761807 (7)_
Os04g45190.2 6Oryza sativa8E-10124960795 (5)_
Os08g06020.1 7Oryza sativa7E-96238627912 (12)_
Zm00001eb172580_P002 agpv5Zea mays2E-9923863810 (0)_
v1_GRMZM2G104907_P01 4a53Zea mays2E-99238638116 (15)_
GRMZM2G104907_P01 3.21Zea mays2E-99238638110 (10)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Apidaecin(1) Motile_Sperm(1)
TargetP: Cytoplasm (Class 2 C0.079; M0.054; S0.157; _0.810)
Predotar:
Subcel. Location:
TM-HMM prediction: 1 TMs
Aramemnon: 1 TMs
TAT position:
Length 239 aa (-cTP 168)
Molecular Weight 26.44 kDA(-cTP )
PI 8.97(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1494Detail       leaf [A. thaliana]  
1544Detail       leaf [A. thaliana] TiO2 thylakoid membranek1xk3
1545Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1547Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3
1548Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1551Detail       leaf [A. thaliana] TiO2 thylakoid membranek1k3
1552Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1557Detail       leaf [A. thaliana] TiO2 thylakoid membranewt
1576Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1577Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1578Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1579Detail       leaf [A. thaliana] TiO2 thylakoid membraneWT
1580Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1581Detail       leaf [A. thaliana] TiO2 thylakoid membraneK2K3
1712Detail       Rosettes [A. thaliana] Thylakoids thylakoid membraneWild-type
2006Detail       leaf [A. thaliana] over expressed M48 plastoglobuleM48
2008Detail       leaf [A. thaliana] RNAi PG plastoglobuleRNAi
2011Detail       leaf [A. thaliana] total leaf tissue opda1-2
2013Detail       leaf [A. thaliana] total leaf tissue wt
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2245Detail       seedlings [A. thaliana] total tissue wild-type
2246Detail       seedlings [A. thaliana] total tissue gfs9
2251Detail       seedlings [A. thaliana] total tissue wild-type
2252Detail       seedlings [A. thaliana] total tissue gfs9
2320Detail        [A. thaliana] Thylakoids plastoglobule 
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 

* For details about the exprimental sources click here.

Published Proteomics Data

 14506206(Plasma Membrane proteome)
14506206(plasma membrane (phosphorylated))
15308754(plasma membrane (phosphorylated))
16618929(ER-LOPIT-callus)
17317660(Plasma Membrane proteome)
17644812(plasma membrane - suspension cells)
18463617(suspension cells-phosphorylated proteins)
19546170(mature pollen grains)
19245862(nuclear phosphoproteins (seedlings & cell culture))
19253305(phosphoproteins (etiolated seedling))
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
21325567(root-proteome (wt & det3))
20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help