PPDB

PPDB	The Plant Proteome Database

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AT2G45000.1 structural constituent of nuclear pore

Lab Annot.

Nucleoporin Nup62
Mapman: 29.3.1 protein.targeting.nucleus

Curated Location

nucleus (Pubmed: 21189294 )

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
Os01g63780.1 7 Oryza sativa 8E-106 220 68 82 0 (0) C
Os01g63780.2 7 Oryza sativa 2E-71 166 71 84 0 (0) C
Zm00001eb367060_P002 agpv5 Zea mays 9E-107 209 69 82 0 (0) C
GRMZM2G061043_P01 3.21 Zea mays 4E-43 120 60 76 1 (1) _
v1_GRMZM2G061043_P01 4a53 Zea mays 4E-43 120 60 76 6 (6) _

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	APG6_N(1) DUF1664(2) Exonuc_VII_L(1) FapA(1) Nbl1_Borealin_N(3) Nsp1_C(1) Nucleo
TargetP:	Chloroplast (Class 1 C0.881; M0.049; S0.000; _0.076)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	739 aa (-cTP 712)
Molecular Weight	73.48 kDA(-cTP 70.88)
PI	4.77(-cTP 4.77)

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
2010	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)
21166475(cytosol-enriched&curated)
21173025(root proteome)
21189294(nuclear pore complex (co-IPs RAE1,Nup43,50a,93a,136))

Comparative Proteomics Data