PPDB

 The Plant Proteome Database

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AT2G44920.1   Tetratricopeptide repeat (TPR)-like superfamily protein
Lab Annot. thylakoid lumen pentapeptide protein (structure solved - 22139148)
Mapman: 26.62* misc.pentapeptide-containing protein
Curated Location thylakoid-peripheral-lumenal-side (Pubmed: 23198870 11826309 11719511 18431481 ) (supported by in-house exprements)

TAIR curated location: thylakoid membrane (sensu Viridiplantae) & thylakoid lumen (sensu Viridiplantae)15322131,11826309,11719511
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G44920.2 11Arabidopsis thaliana2E-133187100100362 (285)C
AT5G55000.1 11Arabidopsis thaliana1E-089838481 (0)_
AT5G55000.2 11Arabidopsis thaliana2E-089838481 (0)_
Os01g05080.1 7Oryza sativa2E-67111929648 (48)C
Os01g05080.2 7Oryza sativa1E-528794970 (0)C
Os10g30190.1 7Oryza sativa1E-069238510 (0)_
Zm00001eb335810_P001 agpv5Zea mays5E-6111184920 (0)M
GRMZM2G010929_P01 3.21Zea mays5E-61111849260 (60)M
v1_GRMZM2G010929_P02 4a53Zea mays5E-61111849260 (60)M
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Pentapeptide(5) Pentapeptide_3(2) Pentapeptide_4(1)
TargetP: Chloroplast (Class 1 C0.941; M0.027; S0.036; _0.013)
Predotar:
Subcel. Location: Lumen
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 210 aa (-cTP 176) (-lTP 129)
Molecular Weight 22.43 kDA(-cTP 18.72)(-lTP 13.68)
PI 9.14(-cTP 8.75)(-lTP 9.166)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
26Detail       leaf [A. thaliana] plastid thylakoid membranewild-type
30Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
107Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
170Detail       leaf [A. thaliana] plastid thylakoid membranewild-type
187_188Detail       leaf [A. thaliana] chloroplast stromaclpr2-1
310Detail       leaf [A. thaliana] total leaf tissue clpr2-1:R2-TAPlong
326Detail       leaf [A. thaliana] chloroplast stromawild-type
327Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
342Detail       leaf [A. thaliana] chloroplast low density membranewild-type
343Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
351Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
352Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
355Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
356Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
361Detail       leaf [A. thaliana] total leaf tissue 1.07 wild-type
371Detail       leaf [A. thaliana] total leaf tissue clpr4-1
412Detail       leaf [A. thaliana] stroma - R-X102 tag-CNPAGE clpr2-1-TapTagR2
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
528Detail       leaf [A. thaliana] total leaf tissue wild-type (wt2)
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
622Detail       leaf [A. thaliana] total leaf tissue wild-type
641Detail        [A. thaliana] plastid nucleoid (crude) wild-type
869Detail       leaf [A. thaliana] chloroplast stromawild-type
871Detail       leaf [A. thaliana] chloroplast stromawild-type
876Detail       leaf [A. thaliana] chloroplast thylakoid membranewild-type
1114Detail        [A. thaliana] RARE1 co-IP rare-1
1334Detail       leaf [A. thaliana] total tissue - low mass region clpt1xclpt2
1345Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 1)
1346Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 2)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1351Detail       leaf [A. thaliana] total tissue t1-t2
1400Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1404Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 wild-type
1405Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1406Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. wild-type
1408Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1409Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 wild-type
1410Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 wild-type
1411Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.1 clpr2-1
1412Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 1.2 clpr2-1
1413Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR1 wild-type
1414Detail       leaf [A. thaliana] total leaf tissue -114 rep1tR2 wild-type
1415Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.1 clpr2-1
1416Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.2 clpr2-1
1432Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
1447Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 3)
1455Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1483Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 2)
1513Detail       leaf [A. thaliana] wild-type
1515Detail       leaf [A. thaliana] wild-type
1541Detail       leaf [A. thaliana] Thylakoids plastoglobuleM-48
1621Detail        [A. thaliana] m48
1870Detail       Total leaf [A. thaliana] Stroma wild-type
1999Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2002Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2021Detail       leaf [A. thaliana] total leaf tissue  
2031Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2032Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2033Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2034Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2037Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2038Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2039Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2040Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2041Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2042Detail       Total leaf [A. thaliana] chloroplast stromawt and icp55c-3
2114Detail       leaf [A. thaliana] Stroma stromawt
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2246Detail       seedlings [A. thaliana] total tissue gfs9
2398Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/35SRecA-GFP
2399Detail       leaf-soluble [A. thaliana] GFP-nano-trap wt/DUF760-1GFP/ClpC1WTSTREP

* For details about the exprimental sources click here.

Published Proteomics Data

 15028209(Total chloroplast)
11719511(Thylakoid lumen proteome)
11826309(thylakoid peripheral&lumen)
15322131(Thylakoid-stripped)
17407188(cotyledon)
16648217(thylakoids)
18431481(chloroplast)
18814325(cotyledons)
19461964(thylakoid lumen (light-induced))
19525416(leaf (wt and clpr4-1 mutant))
17216043(leaf)
20423899(chloroplast)
19888209(80S polysomal fraction)
19888209(leaves)
18433418(redox proteome (chloroplast))
18445580(leaves)
19114538(guard cells Arabidopsis leaf)
19995723(chloroplast reference proteome)
21311031(chloroplasts)
21515685(GreenCut2)

Comparative Proteomics Data

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