PPDB

The Plant Proteome Database

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AT2G43970.2   RNA-binding protein

Lab Annot.
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G43970.1 11Arabidopsis thaliana0545979724 (9)C
AT3G19090.1 11Arabidopsis thaliana2E-4734134480 (0)_
AT3G19090.2 11Arabidopsis thaliana8E-4236831440 (0)_
Os12g12360.1 7Oryza sativa3E-7836645600 (0)C
Os08g42980.1 7Oryza sativa3E-7235242595 (5)C
Os12g12360.2 7Oryza sativa5E-6919258730 (0)C
Zm00001eb411320_P001 agpv5Zea mays3E-7537044570 (0)_
GRMZM2G171518_P01 3.21Zea mays3E-7537044571 (1)_
v1_GRMZM2G171518_P01 4a53Zea mays3E-7537044571 (1)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF913(2) La(2) PAM2(1) RRM_1(1)
TargetP: Chloroplast (Class 2 C0.960; M0.016; S0.005; _0.270)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 529 aa (-cTP 481)
Molecular Weight 58.73 kDA(-cTP 53.76)
PI 8.71(-cTP 9.09)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
311Detail       leaf [A. thaliana] total leaf tissue clpr2-1:R2-his6
2238Detail       seedlings [A. thaliana] total tissue gfs9
2239Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19376835(leaf phosphoproteins)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help