PPDB

The Plant Proteome Database

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AT2G43970.1   RNA-binding protein

Lab Annot.
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G43970.2 11Arabidopsis thaliana054597979 (3)C
AT3G19090.1 11Arabidopsis thaliana5E-5534936500 (0)_
AT5G46250.1 11Arabidopsis thaliana3E-5338732510 (0)_
Os12g12360.1 7Oryza sativa5E-9136648640 (0)C
Os08g42980.1 7Oryza sativa2E-8535246635 (5)C
Os12g12360.2 7Oryza sativa2E-8119264810 (0)C
Zm00001eb411320_P001 agpv5Zea mays2E-8637047600 (0)_
GRMZM2G171518_P01 3.21Zea mays2E-8637047601 (1)_
v1_GRMZM2G171518_P01 4a53Zea mays2E-8637047601 (1)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: DUF913(2) La(2) PAM2(1) RRM_1(2)
TargetP: Chloroplast (Class 2 C0.960; M0.016; S0.005; _0.270)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 545 aa (-cTP 497)
Molecular Weight 60.59 kDA(-cTP 55.61)
PI 7.90(-cTP 8.71)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
311Detail       leaf [A. thaliana] total leaf tissue clpr2-1:R2-his6
2238Detail       seedlings [A. thaliana] total tissue gfs9
2239Detail       seedlings [A. thaliana] total tissue gfs9
2255Detail       leaf [A. thaliana] total seedlings gfs9
2256Detail       leaf [A. thaliana] total seedlings gfs9
2257Detail       leaf [A. thaliana] total seedlings gfs9
2258Detail       leaf [A. thaliana] total seedlings gfs9
2259Detail       leaf [A. thaliana] total seedlings gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

19200160(flower-stage 12)
19376835(leaf phosphoproteins)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help