PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G43890.1   Pectin lyase-like superfamily protein
Lab Annot.
Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT1G05650.1 11Arabidopsis thaliana038864760 (0)S
AT1G05660.1 11Arabidopsis thaliana039062760 (0)S
AT2G43880.1 11Arabidopsis thaliana1E-16137257770 (0)S
Os01g43490.1 7Oryza sativa2E-14039250690 (0)S
Os01g66710.1 7Oryza sativa2E-11939246640 (0)S
Os11g14410.1 7Oryza sativa8E-10233348630 (0)S
Zm00001eb145110_P001 agpv5Zea mays2E-12239745630 (0)S
GRMZM2G026855_P01 3.21Zea mays2E-12239745630 (0)S
v1_GRMZM2G026855_P01 4a53Zea mays2E-12239745630 (0)S
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: Glyco_hydro_28(1) Pectate_lyase_3(2) Pectate_lyase_4(2)
TargetP: Secreted (Class 1 C0.008; M0.012; S0.961; _0.039)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 392 aa (-cTP 334)
Molecular Weight 42.01 kDA(-cTP )
PI 9.78(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1600Detail        [A. thaliana]  
2184Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help