PPDB

PPDB	The Plant Proteome Database

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AT2G43880.1 Pectin lyase-like superfamily protein

Lab Annot.

Mapman: 10.6.3 cell wall.degradation.pectate lyases and polygalacturonases

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G43880.2 11 Arabidopsis thaliana 0 322 100 100 0 (0) S
AT2G43890.1 11 Arabidopsis thaliana 2E-165 394 56 75 4 (4) S
AT1G05650.1 11 Arabidopsis thaliana 2E-160 391 57 74 0 (0) S
Os01g43490.1 7 Oryza sativa 3E-126 372 50 68 0 (0) S
Os01g66710.1 7 Oryza sativa 2E-122 391 48 64 0 (0) S
Os11g14410.1 7 Oryza sativa 2E-100 338 45 65 0 (0) S
Zm00001eb145110_P001 agpv5 Zea mays 9E-118 392 46 63 0 (0) S
GRMZM2G026855_P01 3.21 Zea mays 9E-118 392 46 63 0 (0) S
v1_GRMZM2G026855_P01 4a53 Zea mays 9E-118 392 46 63 0 (0) S
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Beta_helix(3) Beta_helix_3(2) Glyco_hydro_28(1) LSM_int_assoc(1) NosD(3) Pectate
TargetP:	Secreted (Class 1 C0.144; M0.010; S0.973; _0.014)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:
TAT position:
Length	394 aa (-cTP 331)
Molecular Weight	42.74 kDA(-cTP )
PI	9.84(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data