PPDB

The Plant Proteome Database

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AT2G43810.1   Small nuclear ribonucleoprotein family protein

Lab Annot.
Mapman: 27.1 RNA.processing
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G43810.3 11Arabidopsis thaliana3E-62911001000 (0)_
AT2G43810.2 11Arabidopsis thaliana3E-62911001004 (4)_
AT3G59810.1 11Arabidopsis thaliana1E-549187920 (0)_
Os02g30624.2 7Oryza sativa5E-497989960 (0)_
Os02g30624.1 7Oryza sativa5E-497989960 (0)_
Os04g31950.1 7Oryza sativa3E-487988940 (0)_
GRMZM2G159675_P02 3.21Zea mays3E-508289932 (2)_
Zm00001eb421160_P001 agpv5Zea mays3E-508289930 (0)_
v1_GRMZM2G159675_P02 4a53Zea mays3E-508289935 (5)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: LSM(1) SM-ATX(1)
TargetP: Cytoplasm (Class 3 C0.254; M0.099; S0.119; _0.845)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 91 aa (-cTP 68)
Molecular Weight 9.73 kDA(-cTP )
PI 7.81(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1351Detail       leaf [A. thaliana] total tissue t1-t2
1352Detail       leaf [A. thaliana] total tissue Prep1_Prep2
1353Detail       leaf [A. thaliana] total tissue Prep1_Prep2_t1
1354Detail       leaf [A. thaliana] total tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

21173025(root proteome)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help