PPDB

The Plant Proteome Database

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AT2G42560.1   late embryogenesis abundant domain-containing protein / LEA domain-containing protein

Lab Annot. late embryogenesis abundant domain-containing protein / LEA domain-containing protein
Mapman: 35.1.22 not assigned.no ontology.late embryogenesis abundant domain-containing protein
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G36640.1 11Arabidopsis thaliana7E-17181415110 (9)_
AT2G36640.2 11Arabidopsis thaliana2E-1618141510 (0)_
AT2G03850.1 11Arabidopsis thaliana4E-1011540530 (0)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: LEA_4(7)
TargetP: Cytoplasm (Class 3 C0.164; M0.208; S0.059; _0.721)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 635 aa (-cTP 632)
Molecular Weight 67.20 kDA(-cTP )
PI 5.78(-cTP )

Experimental Evidence

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View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2252Detail       seedlings [A. thaliana] total tissue gfs9
2291Detail        [A. thaliana] Clp C1 TRAP
2301Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

11402211,12068122,15047896,16679420,17028149(seed-all-Jobpapers)
15908592(Carbonylated seed protein)
17293592(total seedlings û light and dark grown)
18599647(seed proteome)
18436743(specific to seeds)
20702726(mature seeds)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help