PPDB

 The Plant Proteome Database

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AT2G42480.1   MATH domain/coiled-coil protein
Lab Annot. TRAF-like protein
Mapman: 35.1 not assigned.no ontology
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G42465.1 11Arabidopsis thaliana8E-6139036530 (0)M
AT2G42475.1 11Arabidopsis thaliana4E-5839441570 (0)_
AT2G42460.1 11Arabidopsis thaliana3E-4930136530 (0)_
Os12g40520.1 7Oryza sativa8E-1314232520 (0)_
Os12g30540.1 7Oryza sativa1E-10122355128 (28)_
Os01g56800.1 7Oryza sativa1E-1012036590 (0)M
Zm00001eb408670_P002 agpv5Zea mays4E-1313735510 (0)_
Zm00001eb408670_P001 agpv5Zea mays4E-1313735510 (0)_
Zm00001eb030950_P001 agpv5Zea mays7E-1314232520 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: MATH(2) NPV_P10(2)
TargetP: Cytoplasm (Class 2 C0.117; M0.074; S0.092; _0.843)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 370 aa (-cTP 272)
Molecular Weight 42.65 kDA(-cTP )
PI 4.82(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
429Detail       leaf [A. thaliana]  
1175Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1369Detail        [A. thaliana] chloroplast fractionation  
1455Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1465Detail       leaf [A. thaliana] co-IP GST-ClpS stroma clpc1 x clps (rep. 1)
1690Detail        [A. thaliana]  
1726Detail        [A. thaliana]  
1760Detail       leaf [A. thaliana] total leaf tissue DXS_Flag

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help