PPDB

PPDB	The Plant Proteome Database

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AT2G42350.1 RING/U-box superfamily protein

Lab Annot.

RING/U-box protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G42360.1 11 Arabidopsis thaliana 2E-80 238 57 67 0 (0) _
AT3G62690.1 11 Arabidopsis thaliana 2E-26 164 35 54 0 (0) _
AT3G16720.1 11 Arabidopsis thaliana 2E-23 148 36 48 0 (0) _
Os01g55110.1 7 Oryza sativa 1E-25 238 31 45 0 (0) _
Os06g48065.1 7 Oryza sativa 3E-21 83 50 62 0 (0) _
Os06g34620.1 7 Oryza sativa 5E-21 172 29 45 0 (0) _
v1_GRMZM2G428179_P01 4a53 Zea mays 3E-23 241 31 44 0 (0) C
GRMZM2G428179_P01 3.21 Zea mays 3E-23 241 31 44 0 (0) C
Zm00001eb370730_P001 agpv5 Zea mays 3E-23 241 31 44 0 (0) C
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF2417(1) FANCL_C(1) Orf78(1) PET117(1) PHD(1) Prok-RING_1(2) Prok-RING_4(1) RI
TargetP:	Cytoplasm (Class 1 C0.077; M0.024; S0.035; _0.982)
Predotar:
Subcel. Location:
TM-HMM prediction:	1 TMs
Aramemnon:	1 TMs
TAT position:
Length	217 aa (-cTP 153)
Molecular Weight	24.42 kDA(-cTP )
PI	5.97(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data