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PPDB	The Plant Proteome Database

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AT2G42270.1 U5 small nuclear ribonucleoprotein helicase

Lab Annot.

U5 small nuclear ribonucleoprotein helicase, putative
Mapman: 27.5* RNA.DEAD/DEAH BOX helicase

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT1G20960.2 11 Arabidopsis thaliana 0 2173 82 90 125 (90) M
AT1G20960.1 11 Arabidopsis thaliana 0 2173 82 90 127 (92) M
AT5G61140.2 11 Arabidopsis thaliana 0 1709 46 64 31 (19) M
Os02g01740.1 7 Oryza sativa 0 2189 70 83 31 (31) M
Os03g53220.1 7 Oryza sativa 0 2176 64 77 0 (0) _
Os03g11470.1 7 Oryza sativa 0 1135 41 61 0 (0) _
Zm00001eb328850_P001 agpv5 Zea mays 0 2189 70 83 0 (0) _
v1_GRMZM2G026991_P01 4a53 Zea mays 0 2189 70 83 49 (49) _
GRMZM2G026991_P01 3.21 Zea mays 0 2208 70 82 66 (28) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	AAA_11(1) AAA_19(2) AAA_22(2) AAA_30(2) DEAD(2) GCN5L1(2) Helicase_C(2) Helicase
TargetP:	Cytoplasm (Class 5 C0.072; M0.504; S0.039; _0.592)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	2172 aa (-cTP 2137)
Molecular Weight	247.39 kDA(-cTP )
PI	5.65(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
355	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
2220	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2239	Detail								seedlings [A. thaliana]	total tissue	gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

21533090(plasmodesmata-crude)

Comparative Proteomics Data