PPDB

PPDB	The Plant Proteome Database

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AT2G42160.1 zinc finger (ubiquitin-hydrolase) domain-containing protein

Lab Annot.

zinc finger (ubiquitin-hydrolase) domain-containing protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G42160.2 11 Arabidopsis thaliana 0 437 99 100 0 (0) _
AT2G42160.3 11 Arabidopsis thaliana 0 401 99 99 0 (0) _
AT2G26000.3 11 Arabidopsis thaliana 1E-126 457 41 63 0 (0) C
Os04g55480.2 7 Oryza sativa 1E-161 424 50 70 0 (0) _
Os04g55480.1 7 Oryza sativa 1E-159 409 52 71 0 (0) _
Os02g09060.1 7 Oryza sativa 2E-127 431 45 63 0 (0) C
Zm00001eb068570_P002 agpv5 Zea mays 5E-160 540 43 62 0 (0) _
GRMZM2G066169_P03 3.21 Zea mays 5E-160 540 43 62 0 (0) _
Zm00001eb068570_P001 agpv5 Zea mays 2E-150 540 42 59 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	APG6_N(1) BRAP2(1) DUF4200(1) DUF4337(1) KASH_CCD(1) Vps51(1) ZapB(1) zf-RING_11
TargetP:	Cytoplasm (Class 3 C0.183; M0.051; S0.007; _0.772)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	488 aa (-cTP 395)
Molecular Weight	55.21 kDA(-cTP )
PI	5.52(-cTP )

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

21166475(cytosolic-fractions-crude)

Comparative Proteomics Data