PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G42100.1   Actin-like ATPase superfamily protein

Lab Annot. actin
Mapman: 31.1 cell.organisation
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G12110.1 11Arabidopsis thaliana03788392130 (92)_
AT3G53750.1 11Arabidopsis thaliana03788392182 (95)_
AT3G53750.2 11Arabidopsis thaliana037883920 (0)_
Os03g50885.1 7Oryza sativa0368859322 (22)_
Os05g01600.1 7Oryza sativa0378839245 (45)_
Os05g01600.2 7Oryza sativa0378839245 (45)_
GRMZM2G047055_P03 3.21Zea mays03688593244 (226)_
GRMZM2G047055_P01 3.21Zea mays03688593244 (226)_
Zm00001eb216070_P001 agpv5Zea mays036885930 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Actin(1)
TargetP: Cytoplasm (Class 3 C0.233; M0.090; S0.103; _0.827)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon: 2 TMs
TAT position:
Length 378 aa (-cTP 331)
Molecular Weight 42.12 kDA(-cTP )
PI 5.18(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
527Detail       leaf [A. thaliana] total leaf tissue wild-type (wt1)
1347Detail       leaf [A. thaliana] total tissue (5 day HL) wild-type (rep. 3)
1348Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 1)
1349Detail       leaf [A. thaliana] total tissue (5 day HL) abck2xabck3 (rep. 2)
1439Detail       leaf [A. thaliana] total tissue (0 day HL) wild-type (rep. 1)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1445Detail       leaf [A. thaliana] total tissue (3 day HL) wild-type (rep. 1)
2185Detail       Rosettes [A. thaliana] total soluble tic40 and wt
2249Detail       seedlings [A. thaliana] total tissue gfs9

* For details about the exprimental sources click here.

Published Proteomics Data

18814325(cotyledons)
17216043(leaf)
20733066(phosphoproteome-ABA-leaf)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help