PPDB

 The Plant Proteome Database

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AT2G42070.1   nudix hydrolase homolog 23
Lab Annot. pyrophosphohydrolase FAD (ATNUDX23)
Mapman: 18.3 Co-factor and vitamine metabolism.riboflavin
Curated Location plastid stroma (Pubmed: 23198870 18815383 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G42070.2 11Arabidopsis thaliana02611001000 (0)C
Os09g38040.1 7Oryza sativa2E-10419470860 (0)M
Os09g38040.2 7Oryza sativa4E-5711072880 (0)M
GRMZM2G033634_P05 3.21Zea mays3E-10619570861 (1)_
Zm00001eb320790_P004 agpv5Zea mays3E-10619570860 (0)_
v1_GRMZM2G033634_P05 4a53Zea mays3E-10619570860 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DZR(1) NUDIX(1) NUDIX_4(1) Nudix_N_2(1) PknG_rubred(1) Prim_Zn_Ribbon(1) zinc_ri
TargetP: Chloroplast (Class 3 C0.966; M0.452; S0.001; _0.002)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 280 aa (-cTP 205)
Molecular Weight 30.79 kDA(-cTP 22.79)
PI 9.02(-cTP 6.71)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
420Detail       leaf [A. thaliana] chloroplast stromaclpR1-stop (EMS)
1457Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1458Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 1)
1459Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 2)
1461Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 1)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
2067Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2068Detail       Total leaf [A. thaliana] total soluble wt & prep1xprep2xclpt1xclpt2*
2114Detail       leaf [A. thaliana] Stroma stromawt
2115Detail       leaf [A. thaliana] Stroma stromacGep
2144Detail       Total leaf [A. thaliana] total soluble stromawt & cgep
2150Detail       Total leaf [A. thaliana] total soluble stromawt & cgep

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data

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