PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT2G41630.1 transcription factor IIB

Lab Annot.

transcription factor IIB
Mapman: 27.2 RNA.transcription

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G10330.1 11 Arabidopsis thaliana 0 312 85 92 7 (4) _
AT3G29380.1 11 Arabidopsis thaliana 1E-80 320 43 62 1 (1) _
AT3G57370.1 11 Arabidopsis thaliana 2E-48 369 33 49 0 (0) M
Os09g36440.1 7 Oryza sativa 0 312 77 89 0 (0) _
Os05g47480.1 7 Oryza sativa 1E-90 302 48 67 0 (0) _
Os03g09820.1 7 Oryza sativa 4E-86 292 46 66 0 (0) _
v1_GRMZM2G091586_P03 4a53 Zea mays 0 312 75 89 11 (11) _
Zm00001eb319760_P003 agpv5 Zea mays 0 312 75 89 0 (0) _
Zm00001eb319760_P002 agpv5 Zea mays 0 312 75 89 0 (0) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Cyclin_N(1) HTH_5(1) HTH_Tnp_ISL3(1) Ribosomal_S27e(1) TF_Zn_Ribbon(1) TFIIB(2)
TargetP:	Cytoplasm (Class 1 C0.055; M0.053; S0.046; _0.923)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	312 aa (-cTP 236)
Molecular Weight	34.27 kDA(-cTP )
PI	6.34(-cTP )

Experimental Evidence

Expand

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
1401	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	clpp3-1

* For details about the exprimental sources click here.

Published Proteomics Data

19546170(mature pollen grains)
19376835(leaf phosphoproteins)
19114538(guard cells Arabidopsis leaf)
21173025(root proteome)
20813957(SUMO proteome)
21768351(Leaf-Phosphoproteome)

Comparative Proteomics Data