PPDB

PPDB	The Plant Proteome Database

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AT2G41500.1 WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-like protein

Lab Annot.

WD-40 repeat protein / small nuclear ribonucleoprotein Prp4p-related
Mapman: 27.1 RNA.processing

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G41500.2 11 Arabidopsis thaliana 0 554 100 100 0 (0) C
AT2G05720.1 11 Arabidopsis thaliana 9E-98 349 49 54 0 (0) _
AT3G49660.1 11 Arabidopsis thaliana 9E-38 290 30 49 0 (0) C
Os03g23909.1 6 Oryza sativa 0 449 64 79 0 (0) _
Os03g23935.1 7 Oryza sativa 0 449 64 79 0 (0) _
Os03g51550.1 7 Oryza sativa 5E-39 311 28 48 2 (2) C
Zm00001eb017050_P005 agpv5 Zea mays 0 471 63 78 0 (0) _
GRMZM2G101689_P01 3.21 Zea mays 0 471 63 78 1 (1) _
v1_GRMZM2G101689_P01 4a53 Zea mays 0 471 63 78 10 (10) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	ANAPC4_WD40(6) BLOC1S3(1) eIF2A(3) Ge1_WD40(5) Nup160(5) PRP4(2) STELLO(1) WD40(
TargetP:	Chloroplast (Class 5 C0.599; M0.031; S0.043; _0.463)
Predotar:
Subcel. Location:	Stroma
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	554 aa (-cTP 485)
Molecular Weight	61.84 kDA(-cTP 54.68)
PI	5.45(-cTP 5.45)

Experimental Evidence

View GeneModel

* For details about the exprimental sources click here.

Published Proteomics Data

21173025(root proteome)
20813957(SUMO proteome)

Comparative Proteomics Data