PPDB

The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G41090.1   Calcium-binding EF-hand family protein

Lab Annot. Calcium-binding EF-hand protein
Mapman: 30.3 signalling.calcium
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G27030.3 11Arabidopsis thaliana5E-611526480232 (151)_
AT3G56800.1 11Arabidopsis thaliana1E-601496580221 (140)_
AT2G41110.1 11Arabidopsis thaliana1E-601496580221 (140)_
Os05g41210.1 7Oryza sativa3E-60149638141 (41)_
Os07g48780.1 7Oryza sativa1E-59149638040 (40)_
Os03g20370.1 7Oryza sativa1E-59149638040 (40)_
v1_GRMZM2G117582_P03 4a53Zea mays4E-60149638180 (79)_
Zm00001eb352350_P001 agpv5Zea mays4E-6014963810 (0)_
v1_GRMZM2G004703_P02 4a53Zea mays4E-60149638180 (79)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Caleosin(4) Dockerin_1(3) EF-hand_1(4) EF-hand_11(2) EF-hand_4(2) EF-hand_5(4) E
TargetP: Cytoplasm (Class 4 C0.045; M0.373; S0.087; _0.762)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 191 aa (-cTP 162)
Molecular Weight 21.73 kDA(-cTP )
PI 4.60(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1415Detail       leaf [A. thaliana] total leaf tissue 1.14 rep 1.1 clpr2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

17848588(total seedling)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help