PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT2G40060.1 Clathrin light chain protein

Lab Annot.

unknown protein - clathrin domain
Mapman: 31.4 cell.vesicle transport

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G51890.1 11 Arabidopsis thaliana 4E-68 236 55 67 7 (2) _
AT2G20760.1 11 Arabidopsis thaliana 1E-55 160 65 76 35 (11) _
Os06g51510.1 7 Oryza sativa 2E-54 187 55 71 13 (13) _
Os04g58240.1 7 Oryza sativa 2E-53 150 62 81 18 (18) _
Os07g27750.1 7 Oryza sativa 3E-49 166 53 72 0 (0) _
Zm00001eb229020_P001 agpv5 Zea mays 2E-57 222 51 65 0 (0) _
v1_GRMZM2G112805_P01 4a53 Zea mays 2E-57 222 51 65 2 (2) _
GRMZM2G112805_P01 3.21 Zea mays 2E-57 222 51 65 14 (5) _
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	Clathrin_lg_ch(2) Orthopox_B11R(1)
TargetP:	Cytoplasm (Class 2 C0.176; M0.082; S0.172; _0.818)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	258 aa (-cTP 256)
Molecular Weight	28.84 kDA(-cTP )
PI	4.90(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
361	Detail								leaf [A. thaliana]	total leaf tissue 1.07	wild-type
527	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt1)
1400	Detail								leaf [A. thaliana]	total leaf tissue 1.14 -rep. 1	wild-type
1525	Detail								leaf [A. thaliana]	chloroplast nucleoid	wild-type (rep. 1)
1529	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	wild-type (rep. 1)
1530	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	wild-type (rep. 1)
1532	Detail								leaf [A. thaliana]	total leaf tissue - 0 uM CAP	clps (rep. 1)
1533	Detail								leaf [A. thaliana]	total leaf tissue - 30 uM CAP	clps (rep. 1)
2013	Detail								leaf [A. thaliana]	total leaf tissue	wt
2014	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1
2016	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2020	Detail								leaf [A. thaliana]	total leaf tissue	prep1-1xprep2-1xopda1-2
2219	Detail								Total soluble [A. thaliana]	Total soluble proteins	cGEP strep
2224	Detail								leaf [A. thaliana]	total leaf tissue	Clp P3 strep
2245	Detail								seedlings [A. thaliana]	total tissue	wild-type
2300	Detail								[A. thaliana]		Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

12938931(Total chloroplast envelope)
17317660(Plasma Membrane proteome)
19200160(flower-stage 12)
17216043(leaf)
19334764(plasma membrane (cell culture))
20166762(guard cells (Arabidopsis))
19114538(guard cells Arabidopsis leaf)
21166475(cytosolic-fractions-crude)
21173025(root proteome)

Comparative Proteomics Data