PPDB

PPDB	The Plant Proteome Database

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AT2G40030.1 nuclear RNA polymerase D1B

Lab Annot.

NRPD1b (nuclear RNA polymerase D 1b); DNA binding / DNA-directed RNA polymerase
Mapman: 27.2 RNA.transcription

Curated Location

TAIR curated location: nucleus16140984

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA Uniprot PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT2G40030.2 11 Arabidopsis thaliana 0 1759 100 100 0 (0) _
AT1G63020.1 11 Arabidopsis thaliana 3E-104 1348 27 45 0 (0) _
AT1G63020.2 11 Arabidopsis thaliana 3E-104 1348 27 45 0 (0) _
Os02g05880.1 7 Oryza sativa 0 2010 40 58 11 (11) _
Os01g73430.1 7 Oryza sativa 0 1442 37 56 0 (0) _
Os05g05860.1 7 Oryza sativa 4E-45 588 27 45 13 (13) _
Zm00001eb207920_P001 agpv5 Zea mays 0 1959 41 59 0 (0) _
v1_GRMZM2G153797_P01 4a53 Zea mays 0 1959 41 59 7 (7) _
v1_GRMZM2G153797_P02 4a53 Zea mays 0 1262 43 61 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF3223(1) RNA_pol_Rpb1_1(1) RNA_pol_Rpb1_2(1) RNA_pol_Rpb1_3(1) RNA_pol_Rpb1_5(
TargetP:	Cytoplasm (Class 2 C0.093; M0.092; S0.181; _0.789)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	1976 aa (-cTP 1943)
Molecular Weight	218.23 kDA(-cTP )
PI	5.88(-cTP )

Experimental Evidence

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View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
875	Detail								leaf [A. thaliana]	chloroplast stroma	wild-type

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data