PPDB

 The Plant Proteome Database

Search PPDB by:

HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink
HyperLink HyperLink HyperLink

 

PPDB home page

AT2G39940.1   RNI-like superfamily protein
Lab Annot. COI1 (CORONATINE INSENSITIVE 1); ubiquitin-protein ligase
Mapman: 29.5.11.4.3.2 protein.degradation.ubiquitin.E3.SCF.FBOX
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT4G03190.1 11Arabidopsis thaliana3E-97574325236 (18)_
AT1G12820.1 11Arabidopsis thaliana5E-9758033520 (0)_
AT3G62980.1 11Arabidopsis thaliana4E-9357632530 (0)_
Os05g37690.1 7Oryza sativa057358750 (0)_
Os01g63420.2 7Oryza sativa057158750 (0)_
Os01g63420.1 7Oryza sativa057158750 (0)_
v1_GRMZM2G353209_P01 4a53Zea mays057657740 (0)_
Zm00001eb367310_P001 agpv5Zea mays057857740 (0)_
Zm00001eb011780_P003 agpv5Zea mays057655730 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: F-box-like(1) F-box_5(1) LRR_6(4) Transp_inhibit(4)
TargetP: Cytoplasm (Class 1 C0.039; M0.082; S0.084; _0.937)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 592 aa (-cTP 507)
Molecular Weight 67.66 kDA(-cTP )
PI 6.06(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1423Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 3)
1424Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 1)
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1431Detail       leaf [A. thaliana] total tissue (2% sucrose) wild-type (rep. 2)
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2290Detail        [A. thaliana] Clp C1 TRAP
2296Detail        [A. thaliana] Clp C1 WT

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
19816138(rosette leaves)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help