PPDB

 The Plant Proteome Database

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AT2G39900.1   GATA type zinc finger transcription factor family protein
Lab Annot. GATA type zinc finger transcription factor protein
Mapman: 33.99 development.unspecified
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT3G55770.1 11Arabidopsis thaliana6E-12120086922 (0)_
AT3G55770.3 11Arabidopsis thaliana6E-12120086922 (0)_
AT3G55770.2 11Arabidopsis thaliana6E-12120086922 (0)_
Os03g15940.1 7Oryza sativa6E-10418076880 (0)_
Os02g42820.1 7Oryza sativa2E-8919663770 (0)_
Os04g45010.1 7Oryza sativa1E-8217865790 (0)_
Zm00001eb011840_P002 agpv5Zea mays3E-9918673840 (0)_
Zm00001eb011840_P001 agpv5Zea mays3E-9918673840 (0)_
GRMZM2G128206_P03 3.21Zea mays3E-9918673840 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: DiS_P_DiS(2) DUF35_N(3) LIM(2) zf-C3HC4_5(2)
TargetP: Cytoplasm (Class 3 C0.016; M0.335; S0.020; _0.843)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 200 aa (-cTP 164)
Molecular Weight 21.90 kDA(-cTP )
PI 9.07(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
2009Detail       leaf [A. thaliana] total leaf tissue wild-type
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2013Detail       leaf [A. thaliana] total leaf tissue wt
2014Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2015Detail       leaf [A. thaliana] total leaf tissue opda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2018Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2226Detail       leaf [A. thaliana] total leaf tissue wild-type
2286Detail        [A. thaliana] Clp C1 WT
2287Detail        [A. thaliana] Clp C1 WT
2296Detail        [A. thaliana] Clp C1 WT
2297Detail        [A. thaliana] Clp C1 WT
2306Detail        [A. thaliana] Clp C1 TRAP

* For details about the exprimental sources click here.

Published Proteomics Data

 20733066(phosphoproteome-ABA-leaf)
21173025(root proteome)

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help