PPDB

The Plant Proteome Database

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AT2G39260.1   regulator of nonsense transcripts UPF2

Lab Annot. binding;RNA binding
Mapman: 29.2.99 protein.synthesis.misc
Curated Location
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os02g42040.1 7Oryza sativa0112166800 (0)S
Os04g44220.1 7Oryza sativa2E-5239834480 (0)_
Zm00001eb185340_P005 agpv5Zea mays0119265800 (0)_
Zm00001eb185340_P001 agpv5Zea mays0119265800 (0)_
Zm00001eb185340_P004 agpv5Zea mays0119265800 (0)_
Show all       

#Spots: The number of publicly accessible spots are in parenthesis

Prediction
PFAM: Glycos_transf_N(1) MIF4G(3) Upf2(1) Ureide_permease(1)
TargetP: Cytoplasm (Class 2 C0.258; M0.056; S0.026; _0.919)
Predotar:
Subcel. Location:
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 1181 aa (-cTP 1160)
Molecular Weight 133.96 kDA(-cTP )
PI 5.39(-cTP )

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  

Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1531Detail       leaf [A. thaliana] total leaf tissue - 40 uM CAP wild-type (rep. 1)

* For details about the exprimental sources click here.

Published Proteomics Data

22060019(phosphoproteome - N-starved seedlings)
21166475(cytosolic-fractions-crude)
21768351(Leaf-Phosphoproteome)
21433285(purified Plasma membrane -cell_cultures)

Comparative Proteomics Data


©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help