PPDB

 The Plant Proteome Database

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AT2G39140.1   pseudouridine synthase family protein
Lab Annot. pseudouridine synthase protein
Mapman: 29.1.30 protein.aa activation.pseudouridylate synthase
Curated Location plastid stroma (Pubmed: 23198870 18599582 )
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   Uniprot   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
AT2G39140.2 11Arabidopsis thaliana03911001000 (0)C
AT3G43340.1 11Arabidopsis thaliana1E-417491930 (0)_
Os03g05806.1 7Oryza sativa8E-13035956714 (4)C
Zm00001eb004240_P001 agpv5Zea mays3E-15439058730 (0)C
v1_GRMZM2G315806_P01 4a53Zea mays8E-120334567048 (48)C
GRMZM2G315806_P01 3.21Zea mays8E-120334567071 (67)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: PseudoU_synth_2(2) S4(2)
TargetP: Chloroplast (Class 5 C0.680; M0.072; S0.513; _0.009)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 410 aa (-cTP 375)
Molecular Weight 45.11 kDA(-cTP 41.31)
PI 9.95(-cTP 9.78)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
1175Detail       leaf [A. thaliana] co-IP RH3 stromawild-type
1178Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1179Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1196Detail       leaf [A. thaliana] co-IP RH3 stromaclpr2-1
1197Detail       leaf [A. thaliana] co-IP ClpR2 stromaclpr2-1
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1403Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1417Detail       leaf [A. thaliana] total tissue (2% sucrose) clpr4-1 (rep. 2)
1453Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1525Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1528Detail       leaf [A. thaliana] chloroplast nucleoidwild-type (rep. 1)
1635Detail       leaf [A. thaliana] Stroma stromaclpt1-2
1640Detail       leaf [A. thaliana] total leaf tissue stromaclpt2-1
1666Detail        [A. thaliana]  
1672Detail        [A. thaliana]  
2291Detail        [A. thaliana] Clp C1 TRAP
2307Detail        [A. thaliana] Clp C1 TRAP
2324Detail       leaf [A. thaliana] THYLAKOIDS thylakoid membrane 
2325Detail       leaf [A. thaliana] thylakoids thylakoid membraneabc1k6

* For details about the exprimental sources click here.

Published Proteomics Data

 19525416(leaf (wt and clpr4-1 mutant))
19334764(plasma membrane (cell culture))

Comparative Proteomics Data

©Klaas J. van Wijk Lab, Cornell University   Web Accessibility Help