PPDB

 The Plant Proteome Database

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AT2G39080.1   NAD(P)-binding Rossmann-fold superfamily protein
Lab Annot. unknown protein
Mapman: 35.2 not assigned.unknown
Curated Location plastid stroma (Pubmed: 23198870 18431481 ) (supported by in-house exprements)
Species Arabidopsis thaliana     Source: TAIR Arabidopsis (v.11)
Links TAIR   PeptideAtlas   POGS   SUBA   PTM     Get sequence
Related Genes

AccverSpeciesEvalueMatchlen%Iden%Similar#spotsTargetP
Os01g26920.1 7Oryza sativa1E-143283678019 (19)C
Os01g26970.5 7Oryza sativa1E-14127867803 (3)C
ChrUn.fgenesh.mRNA.79 7Oryza sativa2E-11527360710 (0) 
Zm00001eb131760_P002 agpv5Zea mays4E-13928466770 (0)C
GRMZM2G017853_P01 3.21Zea mays4E-139284667718 (18)C
v1_GRMZM2G017853_P01 4a53Zea mays4E-139284667724 (24)C
Show all       

#Spots: The number of publicly accessible spots are in parenthesis
Prediction
PFAM: zf-C4_Topoisom(3)
TargetP: Chloroplast (Class 1 C0.948; M0.111; S0.004; _0.026)
Predotar:
Subcel. Location: Stroma
TM-HMM prediction: No
Aramemnon:
TAT position:
Length 351 aa (-cTP 287)
Molecular Weight 38.21 kDA(-cTP 31.06)
PI 8.13(-cTP 6.27)

Experimental Evidence

Expand

View Identified Peptides  

View GeneModel  
Expr*SpotMW nativeMW denaturedpI nativepI denaturedTypeMowseAmbiguityTissueSample fromGenotype
195_194Detail       leaf [A. thaliana] chloroplast stromaffc1-2
303Detail       leaf [A. thaliana] chloroplast stromawild-type
339Detail       leaf [A. thaliana] chloroplast stromawild-type
420Detail       leaf [A. thaliana] chloroplast stromaclpR1-stop (EMS)
544Detail       leaf [A. thaliana] stroma (FPLC) <600 kDa (LMA) wild-type
755Detail        [A. thaliana]  
869Detail       leaf [A. thaliana] chloroplast stromawild-type
870Detail       leaf [A. thaliana] chloroplast stromawild-type
874Detail       leaf [A. thaliana] chloroplast stromawild-type
1392Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1394Detail       leaf [A. thaliana] total leaf tissue wild-type (rep. 1)
1396Detail       leaf [A. thaliana] total leaf tissue clpt1xclpt2 (rep. 2)
1401Detail       leaf [A. thaliana] total leaf tissue 1.14 -rep. 1 clpp3-1
1407Detail       leaf [A. thaliana] total leaf tissue 1.07 rep 2. clpr2-1
1425Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 2)
1426Detail       leaf [A. thaliana] total leaf tissue prep1xprep2xt1xt2 (rep. 3)
1443Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 2)
1444Detail       leaf [A. thaliana] total tissue (0 day HL) abck2xabck3 (rep. 3)
1458Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 1)
1459Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 2)
1460Detail       leaf [A. thaliana] chloroplast stromaclps (rep. 3)
1462Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 2)
1463Detail       leaf [A. thaliana] chloroplast stromaclpc1 (rep. 3)
1481Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 1)
1482Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 1)
1484Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 2)
1485Detail       leaf [A. thaliana] chloroplast stromawild-type (rep. 3)
1486Detail       leaf [A. thaliana] chloroplast stromaclpc1 x clps (rep. 3)
1526Detail       leaf [A. thaliana] co-IP GST-ClpS 100ug bait stromaclpc1 x clps (rep. 2)
1941Detail       leaf [A. thaliana] stroma WT stromawild-type
1942Detail       leaf [A. thaliana] stroma WT stromawild-type
1943Detail       leaf [A. thaliana] stroma WT stromawild-type
1944Detail       leaf [A. thaliana] stroma UVR stromaUVR
1945Detail       leaf [A. thaliana] stroma UVR stromaUVR
1946Detail       leaf [A. thaliana] stroma UVR stromawild-type
1947Detail       leaf [A. thaliana] stroma ClpS stromaclpS
1999Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2001Detail       leaf [A. thaliana] stroma ClpS stromaclpS1
2010Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1
2012Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2016Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2017Detail       leaf [A. thaliana] total leaf tissue wild-type
2019Detail       leaf [A. thaliana] total leaf tissue opda1-2
2020Detail       leaf [A. thaliana] total leaf tissue prep1-1xprep2-1xopda1-2
2112Detail       leaf [A. thaliana] Stroma stromawt
2113Detail       leaf [A. thaliana] Stroma stromawt
2251Detail       seedlings [A. thaliana] total tissue wild-type
2316Detail       leaf [A. thaliana] PG plastoglobule 
2317Detail       leaf [A. thaliana] PG plastoglobule 

* For details about the exprimental sources click here.

Published Proteomics Data

 18633119(stroma)
18431481(chloroplast)
17216043(leaf)
21173025(root proteome)
21515685(GreenCut2)

Comparative Proteomics Data
Expr*SourceTech.SpotPepSeqChargeState(z)AreaRatioAmbiguityTissueSample from
195_194ffc1-2 cICAT- exp1 / wt cICAT- exp1cICAT8K.VVLECGGTVLR.L + ICAT_l / K.VVLECGGTVLR.L + ICAT_h20.81 leaf [A. thaliana] chloroplast stroma
195_194ffc1-2 cICAT- exp1 / wt cICAT- exp1cICAT8R.IFLGCDNHPLSR.Q + ICAT_l / R.IFLGCDNHPLSR.Q + ICAT_h30.78 leaf [A. thaliana] chloroplast stroma

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