PPDB

PPDB	The Plant Proteome Database

Search PPDB by:

PPDB home page

AT2G38970.1 Zinc finger (C3HC4-type RING finger) family protein

Lab Annot.

zinc finger (C3HC4-type RING finger) protein
Mapman: 29.5.11.4.2 protein.degradation.ubiquitin.E3.RING

Curated Location

Species

Arabidopsis thaliana Source: TAIR Arabidopsis (v.11)

Links

TAIR PeptideAtlas POGS SUBA PTM Get sequence

Related Genes

Acc ver Species Evalue Matchlen %Iden %Similar #spots TargetP
AT3G54780.1 11 Arabidopsis thaliana 0 700 73 82 0 (0) _
AT3G54780.5 11 Arabidopsis thaliana 0 700 67 76 0 (0) _
AT3G54780.2 11 Arabidopsis thaliana 0 700 67 76 0 (0) _
Os02g56280.1 7 Oryza sativa 0 747 52 67 0 (0) _
Os04g42980.1 7 Oryza sativa 0 727 49 65 0 (0) _
Os02g40664.1 7 Oryza sativa 0 703 51 66 0 (0) M
Zm00001eb191920_P002 agpv5 Zea mays 0 729 53 67 0 (0) _
GRMZM2G130002_P01 3.21 Zea mays 0 729 53 67 0 (0) _
Zm00001eb258330_P002 agpv5 Zea mays 0 739 52 66 0 (0) M
Show all

#Spots: The number of publicly accessible spots are in parenthesis

Prediction

PFAM:	DUF2201(1) GSK-3_bind(1) OrfB_Zn_ribbon(1) PHD(1) VWA(1) VWA_2(1) VWA_3(1) VWA_C
TargetP:	Mitochondria (Class 3 C0.064; M0.555; S0.003; _0.074)
Predotar:
Subcel. Location:
TM-HMM prediction:	No
Aramemnon:
TAT position:
Length	692 aa (-cTP 629)
Molecular Weight	76.35 kDA(-cTP )
PI	8.66(-cTP )

Experimental Evidence

Expand

View Identified Peptides

View GeneModel

Expr*	Spot	MW native	MW denatured	pI native	pI denatured	Type	Mowse	Ambiguity	Tissue	Sample from	Genotype
371	Detail								leaf [A. thaliana]	total leaf tissue	clpr4-1
528	Detail								leaf [A. thaliana]	total leaf tissue	wild-type (wt2)

* For details about the exprimental sources click here.

Published Proteomics Data

Comparative Proteomics Data